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Is it better to make multiple arrays of data or one big array and access it many times?

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I am going to acquire up to 5 samples per second of 50 channels over 30 minutes then average ten of the channels and generate a report.  There are other bits of information needed to complete my task and graphs.  Would it be "faster" for the PC to have one large 4d array with all the information or faster to make several separate arrays?  Would it be more reliable to have one or many(fewer code lockups)?


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